Bioinformatics.fr

Share a resource

BPS

http://bps.rutgers.edu/

Description :
Database of RNA Base-Pair Structures

ITS2

http://its2.bioapps.biozentrum.uni-wuerzburg.de/ITS2_db.html

Description :
Predicted structures of internal transcribed spacer 2 (ITS2)

RNA FRABASE

http://rnafrabase.ibch.poznan.pl/

Description :
A database of 3D RNA fragments within known RNA structures

RNAJunction

http://rnajunction.abcc.ncifcrf.gov/

Description :
RNA structural elements: helical junctions, internal loops, bulges and loop-loop interactions

RsiteDB

http://bioinfo3d.cs.tau.ac.il/RsiteDB/

Description :
RNA-binding sites database

ITS2

http://its2.bioapps.biozentrum.uni-wuerzburg.de/

Description :
The Internal Transcribed Spacer 2 Database (ITS2) includes a homology based RNA structure prediction algorithm which allows the detection and secondary structure prediction of ITS2 sequences. This resource also contains more than 25,000 pre-calculated secondary structures for currently known ITS2 sequences that can be searched and browsed via taxonomy.

MAGNOLIA

http://bioinfo.lifl.fr/magnolia

Description :
MAGNOLIA is software for multiple alignment of protein coding and structural RNA sequences making use of the putative functions of these sequences. Magnolia extracts information from the similarities and differences in the data, and searches for a specific evolutionary pattern.

Software.ncrna.org

http://software.ncrna.org/

Description :
A suite of tools for analyzing non-coding RNA sequences on the basis of their secondary structures. Tools include those for structural multiple sequence alignments, structural pairwise sequence alignments and structural motif finding.

WAR

http://genome.ku.dk/resources/war

Description :
Webserver for Aligning structural RNAs (WAR) is a collection of methods for performing multiple alignments and secondary structure prediction for non-coding RNA sequences. The methods can be run simultaneously and a consensus prediction calculated.

NOBAI

http://www.manet.uiuc.edu/nobai/nobai.php

Description :
NOBAI web server facilitates the search for the evolutionary history embedded in the structure of functional RNA molecules.

RNALogo

http://rnalogo.mbc.nctu.edu.tw/

Description :
RNALogo is a tool for graphical representation of features within multiple RNA sequence alignments and their consensus RNA secondary structures. Each RNA family in Rfam has been graphically evaluated for a logo.

Vienna RNA Websuite

http://rna.tbi.univie.ac.at/

Description :
Vienna RNA Websuite is a comprehensive collection of tools for folding, design and analysis of RNA sequences. Tools include folding of single and aligned sequences, prediction of RNA-RNA interactions, design of sequences with a given structure, analysis of folding landscapes and structural RNA alignments using LocARNA.

SARSA

http://bioalgorithm.life.nctu.edu.tw/SARSA

Description :
SARSA is a web tool for the alignment of two or more RNA tertiary structures. Users input 3D RNA structures in PDB format and SARSA returns a graphical display of the alignment.

DINAMelt

http://www.bioinfo.rpi.edu/applications/hybrid/

Description :
DINAMelt is a tool for predicting hybridization and folding (secondary structure) of DNA and RNA using equilibrium thermodynamic methods.

dnaMATE

http://dna.bio.puc.cl/tm.html

Description :
dnaMATE calculates a consensus melting temperature (Tm) for any given short DNA sequence (16-30 nts) based on three independent thermodynamic data tables. Stand-alone version available; list of other melting temperature calculation servers also provided.

Cancel