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UniPROBE

http://thebrain.bwh.harvard.edu/pbms/webworks_pub/index.php

Description :
Universal Protein binding microarray Resource for Oligonucleotide Binding Evaluation

SuperSite

http://bioinformatics.charite.de/supersite

Description :
Dictionary of binding sites in proteins

Dockground

http://dockground.bioinformatics.ku.edu/

Description :
Protein-protein interfaces in co-crystallized protein structures

HotSprint

http://prism.ccbb.ku.edu.tr/hotsprint/

Description :
Hot spots (functionally and structurally important residues) in protein interfaces

JAIL

http://bioinformatics.charite.de/jail

Description :
Structure-based interface library for macromolecules

piSite

http://pisite.hgc.jp/

Description :
Database of Protein Interaction Sites using multiple binding states in PDB

PRECISE

http://precise.bu.edu/precisedb/

Description :
Predicted and consensus interaction sites in enzymes

3D-Interologs

http://gemdock.life.nctu.edu.tw/3D-Interologs

Description :
Protein-protein interactions in various evolutionary lineages

AtPID

http://atpid.biosino.org/

Description :
Arabidopsis thaliana Protein Interactome Database

Bacteriome.org

http://www.bacteriome.org/

Description :
Protein interaction database for E. coli

ConsensusPathDB

http://cpdb.molgen.mpg.de/

Description :
Database for integration of human functional interactions

CORUM

http://mips.gsf.de/genre/proj/corum

Description :
Experimentally verified mammalian protein complexes

DIMA

http://mips.gsf.de/genre/proj/dima2

Description :
Domain interaction map: experimental and predicted protein domain interactions

DIP - Database of Interacting Proteins

http://dip.doe-mbi.ucla.edu/

Description :
The Database of Interacting Proteins (DIP: http://dip.doe-mbi.ucla.edu) is a database that documents experimentally determined protein-protein interactions. This database provides the scientific community with a comprehensive and integrated set of tools for browsing and extracting information about protein interaction networks. DIP currently catalogs roughly 5,900 proteins participating in about 10,000 distinct interactions contained in more than 80 organisms; the vast majority of interactions to date are in yeast, helicobacter pylori, and human. Tools have been developed that allow the user to analyze, visualize, and integrate his/her own experimental information with the protein interaction network, such as mRNA expression data, domain occurrence and postranslation modifications.

Recent develoments :
An interactive tool to navigate the protein interaction network namely : JDIP (Java-DIP). This tool allow to superimpose on the protein interaction network expression data or any feature.

Aknowledgement :
We thank the DOE and NIH for support to DIP

DOMINE

http://domine.utdallas.edu/

Description :
Known and predicted protein domain interactions observed in PDB entries,

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