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CysView

http://research.i2r.a-star.edu.sg/CysView/

Description :
CysView takes as input various annotated formats of protein sequences, and graphically displays cysteine pairing patterns. It also groups proteins with similar disulfide connectivity patterns.

DiANNA

http://bioinformatics.bc.edu/clotelab/DiANNA/

Description :
DiANNA (DiAminoacid Neural Network Application) a tool that predicts cysteine states of a protein. It can predict whether a particular cysteine is reduced, is forming a disulfide bond, or is bound to a metallic ligand.

PeptideMass

http://us.expasy.org/tools/peptide-mass.html

Description :
Cleaves a protein sequence with a chosen enzyme and computes masses of the generated peptides.

WebProAnalyst

http://wwwmgs.bionet.nsc.ru/mgs/programs/panalyst/

Description :
WebProAnalyst is a tool for searching for residues whose substitutions are correlated with variations in protein activity. Key physicochemical characteristics of these sites can be calculated.

AlgPred

http://www.imtech.res.in/raghava/algpred/

Description :
AlgPred predicts allergenic proteins and maps IgE epitopes on allergenic proteins using several different approaches.

SDPpred

http://math.genebee.msu.ru/~psn/

Description :
SDPpred is a tool for predicting which residues of a protein determine functional differences relative to its homologues. It takes as input an multiple sequence alignment of a protein family divided into groups based on the perceived functional differences.

Sequence Harmony

http://zeus.cs.vu.nl/programs/seqharm/

Description :
Sequence Harmony detects subfamily specific functional sites from a multiple sequence alignment by scoring compositional differences between given subfamily groupings.

REPPER

http://protevo.eb.tuebingen.mpg.de/repper

Description :
REPPER (REPeats and their PERiodicities) is a tool for detecting and analysing regions in protein sequences or sequence alignements that have short gapless repeats.

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