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Gene2Oligo

http://berry.engin.umich.edu/gene2oligo/

Description :
Tool which divides both strands of an input DNA sequence into a set of contiguous oligonucleotides. These oligos are designed with complimentary regions so that the complete set can be combined to synthesize the input DNA sequence in vitro (using oligonucleotide synthesis and assembly PCR).

Genefisher

http://bibiserv.techfak.uni-bielefeld.de/genefisher/

Description :
Interactive primer design tool for standard or degenerate primers; will accept unaligned sequences.

SSR Primer

http://bioinformatics.pbcbasc.latrobe.edu.au/ssrdiscovery.html

Description :
Simple Sequence Repeats (SSR) Primer aids in design of primers that can amplify microsatellite sequences. SPUTNIK is used to screen for SSR and Primer3 for locus specific primer design. Precomputed results can be viewed using the SSR Taxonomy Browser.

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