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Plant Stress-Responsive Gene Catalog

Description :
Stress-responsive gene in various plant species

PPDB: Plant Promoter Database

Description :
Plant promoter database


Description :
Peroxidases from plants, bacteria and fungi


Description :
Plant Transcription Factor Database


Description :
Families of protein-coding genes from five sequenced plant species


Description :
Conserved syntenies for various animal, plant and bacterial genomes

VBI Microbial Database

Description :
Virginia Bioinformatics Institute Phytophtora database


Description :
PathoPlant® has been developed as a relational database to display relevant components and reactions involved in signal transduction related to plant-pathogen interactions. Signal transduction pathways are modeled as consecutive sequences of known molecules and corresponding reactions. PathoPlant entries are linked to associated internal records as well as to entries in external databases such as SWISS-PROT, GenBank, TAIR, AthaMap, PubMed, and TRANSFAC®. PathoPlant has recently been complemented by microarray gene expression data from Arabidopsis thaliana subjected to pathogen infection and elicitor treatment. Implemented web tools enable identification of plant genes regulated by specific stimuli. Up to three stimuli can be combined with the option of induction factor restriction to determine similarly regulated genes. To identify common cis-regulatory elements in co-regulated genes, a resulting gene list can directly be exported to the AthaMap database ( for analysis.

Aknowledgement :
We would like to thank Thomas Zobel, Daniela Bruhn and Juliane Scheithauer for data annotation. The PathoPlant® project is supported by the German Federal Ministry for Education and Research, BMBF, Grant No. 031U110C/031U210C.

References :
1. Bülow, L., Schindler, M., Choi, C. and Hehl R. (2004) PathoPlant®: a database on plant-pathogen interactions. In Silico Biol., 4, 0044.

Plant Organelles Database

Description :
Images of plant organelles and protocols for plant organelle research12


Description :
Plant SNP discovery database


Description :
Plant protein phosphorylation database


Description :
Data repository of plant natural antimicrobial peptides

PPDB: Plant Proteomics Database

Description :
Plant Proteomics Database

Genome Database for Rosaceae

Description :
Genomics of apple, cherry, peach, pear, raspberry, rose and strawberry


Description :
The Gene Co-expression Analysis Tool-box (GeneCAT) is a suite of microarray co-expression analysis tools for plant biology. The platform includes both standard co-expression tools such as gene clustering and expression profiling, as well as tools that combine co-expression analysis with BLAST for functional inferencing. Arabidopsis thaliana and Barley are featured plants.